/*
    *  Licensed to the Apache Software Foundation (ASF) under one or more
    *  contributor license agreements.  See the NOTICE file distributed with
    *  this work for additional information regarding copyright ownership.
    *  The ASF licenses this file to You under the Apache License, Version 2.0
    *  (the "License"); you may not use this file except in compliance with
    *  the License.  You may obtain a copy of the License at
    *
    *     http://www.apache.org/licenses/LICENSE-2.0
   *
   *  Unless required by applicable law or agreed to in writing, software
   *  distributed under the License is distributed on an "AS IS" BASIS,
   *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
   *  See the License for the specific language governing permissions and
   *  limitations under the License.
   */
  package org.apache.commons.compress.harmony.unpack200;
  
  import java.io.BufferedInputStream;
  import java.io.ByteArrayInputStream;
  import java.io.ByteArrayOutputStream;
  import java.io.DataOutputStream;
  import java.io.IOException;
  import java.io.InputStream;
  import java.io.OutputStream;
  import java.io.OutputStreamWriter;
  import java.io.PrintWriter;
  import java.nio.charset.Charset;
  import java.util.ArrayList;
  import java.util.HashSet;
  import java.util.List;
  import java.util.Set;
  import java.util.TimeZone;
  import java.util.jar.JarEntry;
  import java.util.jar.JarOutputStream;
  import java.util.zip.CRC32;
  import java.util.zip.GZIPInputStream;
  import java.util.zip.ZipEntry;
  
  import org.apache.commons.compress.harmony.pack200.Codec;
  import org.apache.commons.compress.harmony.pack200.Pack200Exception;
  import org.apache.commons.compress.harmony.unpack200.bytecode.Attribute;
  import org.apache.commons.compress.harmony.unpack200.bytecode.CPClass;
  import org.apache.commons.compress.harmony.unpack200.bytecode.CPField;
  import org.apache.commons.compress.harmony.unpack200.bytecode.CPMethod;
  import org.apache.commons.compress.harmony.unpack200.bytecode.CPUTF8;
  import org.apache.commons.compress.harmony.unpack200.bytecode.ClassConstantPool;
  import org.apache.commons.compress.harmony.unpack200.bytecode.ClassFile;
  import org.apache.commons.compress.harmony.unpack200.bytecode.ClassFileEntry;
  import org.apache.commons.compress.harmony.unpack200.bytecode.InnerClassesAttribute;
  import org.apache.commons.compress.harmony.unpack200.bytecode.SourceFileAttribute;
  import org.apache.commons.io.input.BoundedInputStream;
  
  /**
   * A Pack200 archive consists of one or more segments. Each segment is stand-alone, in the sense that every segment has the magic number header; thus, every
   * segment is also a valid archive. However, it is possible to combine (non-GZipped) archives into a single large archive by concatenation alone. Thus, all the
   * hard work in unpacking an archive falls to understanding a segment.
   *
   * The first component of a segment is the header; this contains (amongst other things) the expected counts of constant pool entries, which in turn defines how
   * many values need to be read from the stream. Because values are variable width (see {@link Codec}), it is not possible to calculate the start of the next
   * segment, although one of the header values does hint at the size of the segment if non-zero, which can be used for buffering purposes.
   *
   * Note that this does not perform any buffering of the input stream; each value will be read on a byte-by-byte basis. It does not perform GZip decompression
   * automatically; both of these are expected to be done by the caller if the stream has the magic header for GZip streams ({@link GZIPInputStream#GZIP_MAGIC}).
   * In any case, if GZip decompression is being performed the input stream will be buffered at a higher level, and thus this can read on a byte-oriented basis.
   */
  public class Segment {
  
      public static final int LOG_LEVEL_VERBOSE = 2;
  
      public static final int LOG_LEVEL_STANDARD = 1;
  
      public static final int LOG_LEVEL_QUIET = 0;
  
      private SegmentHeader header;
  
      private CpBands cpBands;
  
      private AttrDefinitionBands attrDefinitionBands;
  
      private IcBands icBands;
  
      private ClassBands classBands;
  
      private BcBands bcBands;
  
      private FileBands fileBands;
  
      private boolean overrideDeflateHint;
  
      private boolean deflateHint;
  
      private boolean doPreRead;
  
      private int logLevel;
  
      private PrintWriter logStream;
  
      private byte[][] classFilesContents;
 
     private boolean[] fileDeflate;
 
     private boolean[] fileIsClass;
 
     private InputStream internalBuffer;
 
     private ClassFile buildClassFile(final int classNum) {
         final ClassFile classFile = new ClassFile();
         final int[] major = classBands.getClassVersionMajor();
         final int[] minor = classBands.getClassVersionMinor();
         if (major != null) {
             classFile.major = major[classNum];
             classFile.minor = minor[classNum];
         } else {
             classFile.major = header.getDefaultClassMajorVersion();
             classFile.minor = header.getDefaultClassMinorVersion();
         }
         // build constant pool
         final ClassConstantPool cp = classFile.pool;
         final int fullNameIndexInCpClass = classBands.getClassThisInts()[classNum];
         final String fullName = cpBands.getCpClass()[fullNameIndexInCpClass];
         // SourceFile attribute
         int i = fullName.lastIndexOf("/") + 1; // if lastIndexOf==-1, then
         // -1+1=0, so str.substring(0)
         // == str
 
         // Get the source file attribute
         final List<Attribute> classAttributes = classBands.getClassAttributes()[classNum];
         SourceFileAttribute sourceFileAttribute = null;
         for (final Attribute classAttribute : classAttributes) {
             if (classAttribute.isSourceFileAttribute()) {
                 sourceFileAttribute = (SourceFileAttribute) classAttribute;
             }
         }
 
         if (sourceFileAttribute == null) {
             // If we don't have a source file attribute yet, we need
             // to infer it from the class.
             final AttributeLayout SOURCE_FILE = attrDefinitionBands.getAttributeDefinitionMap().getAttributeLayout(AttributeLayout.ATTRIBUTE_SOURCE_FILE,
                     AttributeLayout.CONTEXT_CLASS);
             if (SOURCE_FILE.matches(classBands.getRawClassFlags()[classNum])) {
                 int firstDollar = -1;
                 for (int index = 0; index < fullName.length(); index++) {
                     if (fullName.charAt(index) <= '$') {
                         firstDollar = index;
                     }
                 }
                 String fileName;
 
                 if (firstDollar > -1 && i <= firstDollar) {
                     fileName = fullName.substring(i, firstDollar) + ".java";
                 } else {
                     fileName = fullName.substring(i) + ".java";
                 }
                 sourceFileAttribute = new SourceFileAttribute(cpBands.cpUTF8Value(fileName, false));
                 classFile.attributes = new Attribute[] { (Attribute) cp.add(sourceFileAttribute) };
             } else {
                 classFile.attributes = new Attribute[] {};
             }
         } else {
             classFile.attributes = new Attribute[] { (Attribute) cp.add(sourceFileAttribute) };
         }
 
         // If we see any class attributes, add them to the class's attributes
         // that will
         // be written out. Keep SourceFileAttributes out since we just
         // did them above.
         final List<Attribute> classAttributesWithoutSourceFileAttribute = new ArrayList<>(classAttributes.size());
         for (int index = 0; index < classAttributes.size(); index++) {
             final Attribute attrib = classAttributes.get(index);
             if (!attrib.isSourceFileAttribute()) {
                 classAttributesWithoutSourceFileAttribute.add(attrib);
             }
         }
         final Attribute[] originalAttributes = classFile.attributes;
         classFile.attributes = new Attribute[originalAttributes.length + classAttributesWithoutSourceFileAttribute.size()];
         System.arraycopy(originalAttributes, 0, classFile.attributes, 0, originalAttributes.length);
         for (int index = 0; index < classAttributesWithoutSourceFileAttribute.size(); index++) {
             final Attribute attrib = classAttributesWithoutSourceFileAttribute.get(index);
             cp.add(attrib);
             classFile.attributes[originalAttributes.length + index] = attrib;
         }
 
         // this/superclass
         final ClassFileEntry cfThis = cp.add(cpBands.cpClassValue(fullNameIndexInCpClass));
         final ClassFileEntry cfSuper = cp.add(cpBands.cpClassValue(classBands.getClassSuperInts()[classNum]));
         // add interfaces
         final ClassFileEntry[] cfInterfaces = new ClassFileEntry[classBands.getClassInterfacesInts()[classNum].length];
         for (i = 0; i < cfInterfaces.length; i++) {
             cfInterfaces[i] = cp.add(cpBands.cpClassValue(classBands.getClassInterfacesInts()[classNum][i]));
         }
         // add fields
         final ClassFileEntry[] cfFields = new ClassFileEntry[classBands.getClassFieldCount()[classNum]];
         // fieldDescr and fieldFlags used to create this
         for (i = 0; i < cfFields.length; i++) {
             final int descriptorIndex = classBands.getFieldDescrInts()[classNum][i];
             final int nameIndex = cpBands.getCpDescriptorNameInts()[descriptorIndex];
             final int typeIndex = cpBands.getCpDescriptorTypeInts()[descriptorIndex];
             final CPUTF8 name = cpBands.cpUTF8Value(nameIndex);
             final CPUTF8 descriptor = cpBands.cpSignatureValue(typeIndex);
             cfFields[i] = cp.add(new CPField(name, descriptor, classBands.getFieldFlags()[classNum][i], classBands.getFieldAttributes()[classNum][i]));
         }
         // add methods
         final ClassFileEntry[] cfMethods = new ClassFileEntry[classBands.getClassMethodCount()[classNum]];
         // methodDescr and methodFlags used to create this
         for (i = 0; i < cfMethods.length; i++) {
             final int descriptorIndex = classBands.getMethodDescrInts()[classNum][i];
             final int nameIndex = cpBands.getCpDescriptorNameInts()[descriptorIndex];
             final int typeIndex = cpBands.getCpDescriptorTypeInts()[descriptorIndex];
             final CPUTF8 name = cpBands.cpUTF8Value(nameIndex);
             final CPUTF8 descriptor = cpBands.cpSignatureValue(typeIndex);
             cfMethods[i] = cp.add(new CPMethod(name, descriptor, classBands.getMethodFlags()[classNum][i], classBands.getMethodAttributes()[classNum][i]));
         }
         cp.addNestedEntries();
 
         // add inner class attribute (if required)
         boolean addInnerClassesAttr = false;
         final IcTuple[] icLocal = getClassBands().getIcLocal()[classNum];
         final boolean icLocalSent = icLocal != null;
         final InnerClassesAttribute innerClassesAttribute = new InnerClassesAttribute("InnerClasses");
         final IcTuple[] icRelevant = getIcBands().getRelevantIcTuples(fullName, cp);
         final List<IcTuple> ic_stored = computeIcStored(icLocal, icRelevant);
         for (final IcTuple icStored : ic_stored) {
             final int innerClassIndex = icStored.thisClassIndex();
             final int outerClassIndex = icStored.outerClassIndex();
             final int simpleClassNameIndex = icStored.simpleClassNameIndex();
 
             final String innerClassString = icStored.thisClassString();
             final String outerClassString = icStored.outerClassString();
             final String simpleClassName = icStored.simpleClassName();
 
             CPUTF8 innerName = null;
             CPClass outerClass = null;
 
             final CPClass innerClass = innerClassIndex != -1 ? cpBands.cpClassValue(innerClassIndex) : cpBands.cpClassValue(innerClassString);
             if (!icStored.isAnonymous()) {
                 innerName = simpleClassNameIndex != -1 ? cpBands.cpUTF8Value(simpleClassNameIndex) : cpBands.cpUTF8Value(simpleClassName);
             }
 
             if (icStored.isMember()) {
                 outerClass = outerClassIndex != -1 ? cpBands.cpClassValue(outerClassIndex) : cpBands.cpClassValue(outerClassString);
             }
             final int flags = icStored.F;
             innerClassesAttribute.addInnerClassesEntry(innerClass, outerClass, innerName, flags);
             addInnerClassesAttr = true;
         }
         // If ic_local is sent, and it's empty, don't add
         // the inner classes attribute.
         if (icLocalSent && icLocal.length == 0) {
             addInnerClassesAttr = false;
         }
 
         // If ic_local is not sent and ic_relevant is empty,
         // don't add the inner class attribute.
         if (!icLocalSent && icRelevant.length == 0) {
             addInnerClassesAttr = false;
         }
 
         if (addInnerClassesAttr) {
             // Need to add the InnerClasses attribute to the
             // existing classFile attributes.
             final Attribute[] originalAttrs = classFile.attributes;
             final Attribute[] newAttrs = new Attribute[originalAttrs.length + 1];
             System.arraycopy(originalAttrs, 0, newAttrs, 0, originalAttrs.length);
             newAttrs[newAttrs.length - 1] = innerClassesAttribute;
             classFile.attributes = newAttrs;
             cp.addWithNestedEntries(innerClassesAttribute);
         }
         // sort CP according to cp_All
         cp.resolve(this);
         // NOTE the indexOf is only valid after the cp.resolve()
         // build up remainder of file
         classFile.accessFlags = (int) classBands.getClassFlags()[classNum];
         classFile.thisClass = cp.indexOf(cfThis);
         classFile.superClass = cp.indexOf(cfSuper);
         // TODO placate format of file for writing purposes
         classFile.interfaces = new int[cfInterfaces.length];
         for (i = 0; i < cfInterfaces.length; i++) {
             classFile.interfaces[i] = cp.indexOf(cfInterfaces[i]);
         }
         classFile.fields = cfFields;
         classFile.methods = cfMethods;
         return classFile;
     }
 
     /**
      * Given an ic_local and an ic_relevant, use them to calculate what should be added as ic_stored.
      *
      * @param icLocal    IcTuple[] array of local transmitted tuples
      * @param icRelevant IcTuple[] array of relevant tuples
      * @return List of tuples to be stored. If ic_local is null or empty, the values returned may not be correct. The caller will have to determine if this is
      *         the case.
      */
     private List<IcTuple> computeIcStored(final IcTuple[] icLocal, final IcTuple[] icRelevant) {
         final List<IcTuple> result = new ArrayList<>(icRelevant.length);
         final List<IcTuple> duplicates = new ArrayList<>(icRelevant.length);
         final Set<IcTuple> isInResult = new HashSet<>(icRelevant.length);
 
         // need to compute:
         // result = ic_local XOR ic_relevant
 
         // add ic_local
         if (icLocal != null) {
             for (final IcTuple element : icLocal) {
                 if (isInResult.add(element)) {
                     result.add(element);
                 }
             }
         }
 
         // add ic_relevant
         for (final IcTuple element : icRelevant) {
             if (isInResult.add(element)) {
                 result.add(element);
             } else {
                 duplicates.add(element);
             }
         }
 
         // eliminate "duplicates"
         duplicates.forEach(result::remove);
 
         return result;
     }
 
     protected AttrDefinitionBands getAttrDefinitionBands() {
         return attrDefinitionBands;
     }
 
     protected ClassBands getClassBands() {
         return classBands;
     }
 
     public SegmentConstantPool getConstantPool() {
         return cpBands.getConstantPool();
     }
 
     protected CpBands getCpBands() {
         return cpBands;
     }
 
     protected IcBands getIcBands() {
         return icBands;
     }
 
     public SegmentHeader getSegmentHeader() {
         return header;
     }
 
     public void log(final int logLevel, final String message) {
         if (this.logLevel >= logLevel) {
             logStream.println(message);
         }
     }
 
     /**
      * Override the archive's deflate hint with the given boolean
      *
      * @param deflateHint the deflate hint to use
      */
     public void overrideDeflateHint(final boolean deflateHint) {
         this.overrideDeflateHint = true;
         this.deflateHint = deflateHint;
     }
 
     /**
      * This performs the actual work of parsing against a non-static instance of Segment. This method is intended to run concurrently for multiple segments.
      *
      * @throws IOException      if a problem occurs during reading from the underlying stream
      * @throws Pack200Exception if a problem occurs with an unexpected value or unsupported codec
      */
     private void parseSegment() throws IOException, Pack200Exception {
 
         header.unpack();
         cpBands.unpack();
         attrDefinitionBands.unpack();
         icBands.unpack();
         classBands.unpack();
         bcBands.unpack();
         fileBands.unpack();
 
         int classNum = 0;
         final int numberOfFiles = header.getNumberOfFiles();
         final String[] fileName = fileBands.getFileName();
         final int[] fileOptions = fileBands.getFileOptions();
         final SegmentOptions options = header.getOptions();
 
         classFilesContents = new byte[numberOfFiles][];
         fileDeflate = new boolean[numberOfFiles];
         fileIsClass = new boolean[numberOfFiles];
 
         final ByteArrayOutputStream bos = new ByteArrayOutputStream();
         final DataOutputStream dos = new DataOutputStream(bos);
 
         for (int i = 0; i < numberOfFiles; i++) {
             String name = fileName[i];
 
             final boolean nameIsEmpty = name == null || name.isEmpty();
             final boolean isClass = (fileOptions[i] & 2) == 2 || nameIsEmpty;
             if (isClass && nameIsEmpty) {
                 name = cpBands.getCpClass()[classBands.getClassThisInts()[classNum]] + ".class";
                 fileName[i] = name;
             }
 
             if (!overrideDeflateHint) {
                 fileDeflate[i] = (fileOptions[i] & 1) == 1 || options.shouldDeflate();
             } else {
                 fileDeflate[i] = deflateHint;
             }
 
             fileIsClass[i] = isClass;
 
             if (isClass) {
                 final ClassFile classFile = buildClassFile(classNum);
                 classFile.write(dos);
                 dos.flush();
 
                 classFilesContents[classNum] = bos.toByteArray();
                 bos.reset();
 
                 classNum++;
             }
         }
     }
 
     /**
      * This performs reading the data from the stream into non-static instance of Segment. After the completion of this method stream can be freed.
      *
      * @param in the input stream to read from
      * @throws IOException      if a problem occurs during reading from the underlying stream
      * @throws Pack200Exception if a problem occurs with an unexpected value or unsupported codec
      */
     private void readSegment(final InputStream in) throws IOException, Pack200Exception {
         log(LOG_LEVEL_VERBOSE, "-------");
         cpBands = new CpBands(this);
         cpBands.read(in);
         attrDefinitionBands = new AttrDefinitionBands(this);
         attrDefinitionBands.read(in);
         icBands = new IcBands(this);
         icBands.read(in);
         classBands = new ClassBands(this);
         classBands.read(in);
         bcBands = new BcBands(this);
         bcBands.read(in);
         fileBands = new FileBands(this);
         fileBands.read(in);
 
         fileBands.processFileBits();
     }
 
     public void setLogLevel(final int logLevel) {
         this.logLevel = logLevel;
     }
 
     public void setLogStream(final OutputStream logStream) {
         this.logStream = new PrintWriter(new OutputStreamWriter(logStream, Charset.defaultCharset()), false);
     }
 
     public void setPreRead(final boolean value) {
         doPreRead = value;
     }
 
     /**
      * Unpacks a packed stream (either .pack. or .pack.gz) into a corresponding JarOuputStream.
      *
      * @param inputStream  a packed input stream, preferably a {@link BoundedInputStream}.
      * @param out output stream.
      * @throws Pack200Exception if there is a problem unpacking
      * @throws IOException      if there is a problem with I/O during unpacking
      */
     public void unpack(final InputStream inputStream, final JarOutputStream out) throws IOException, Pack200Exception {
         unpackRead(inputStream);
         unpackProcess();
         unpackWrite(out);
     }
 
     void unpackProcess() throws IOException, Pack200Exception {
         if (internalBuffer != null) {
             readSegment(internalBuffer);
         }
         parseSegment();
     }
 
     /*
      * Package-private accessors for unpacking stages
      */
     void unpackRead(final InputStream inputStream) throws IOException, Pack200Exception {
         @SuppressWarnings("resource")
         final InputStream in = Pack200UnpackerAdapter.newBoundedInputStream(inputStream);
 
         header = new SegmentHeader(this);
         header.read(in);
 
         final int size = (int) header.getArchiveSize() - header.getArchiveSizeOffset();
 
         if (doPreRead && header.getArchiveSize() != 0) {
             final byte[] data = new byte[size];
             in.read(data);
             internalBuffer = new BufferedInputStream(new ByteArrayInputStream(data));
         } else {
             readSegment(in);
         }
     }
 
     void unpackWrite(final JarOutputStream out) throws IOException {
         writeJar(out);
         if (logStream != null) {
             logStream.close();
         }
     }
 
     /**
      * Writes the segment to an output stream. The output stream should be pre-buffered for efficiency. Also takes the same input stream for reading, since the
      * file bits may not be loaded and thus just copied from one stream to another. Doesn't close the output stream when finished, in case there are more
      * entries (e.g. further segments) to be written.
      *
      * @param out the JarOutputStream to write data to
      * @throws IOException if an error occurs while reading or writing to the streams
      */
     public void writeJar(final JarOutputStream out) throws IOException {
         final String[] fileName = fileBands.getFileName();
         final int[] fileModtime = fileBands.getFileModtime();
         final long[] fileSize = fileBands.getFileSize();
         final byte[][] fileBits = fileBands.getFileBits();
 
         // now write the files out
         int classNum = 0;
         final int numberOfFiles = header.getNumberOfFiles();
         final long archiveModtime = header.getArchiveModtime();
 
         for (int i = 0; i < numberOfFiles; i++) {
             final String name = fileName[i];
             // For Pack200 archives, modtime is in seconds
             // from the epoch. JarEntries need it to be in
             // milliseconds from the epoch.
             // Even though we're adding two longs and multiplying
             // by 1000, we won't overflow because both longs are
             // always under 2^32.
             final long modtime = 1000 * (archiveModtime + fileModtime[i]);
             final boolean deflate = fileDeflate[i];
 
             final JarEntry entry = new JarEntry(name);
             if (deflate) {
                 entry.setMethod(ZipEntry.DEFLATED);
             } else {
                 entry.setMethod(ZipEntry.STORED);
                 final CRC32 crc = new CRC32();
                 if (fileIsClass[i]) {
                     crc.update(classFilesContents[classNum]);
                     entry.setSize(classFilesContents[classNum].length);
                 } else {
                     crc.update(fileBits[i]);
                     entry.setSize(fileSize[i]);
                 }
                 entry.setCrc(crc.getValue());
             }
             // On Windows at least, need to correct for timezone
             entry.setTime(modtime - TimeZone.getDefault().getRawOffset());
             out.putNextEntry(entry);
 
             // write to output stream
             if (fileIsClass[i]) {
                 entry.setSize(classFilesContents[classNum].length);
                 out.write(classFilesContents[classNum]);
                 classNum++;
             } else {
                 entry.setSize(fileSize[i]);
                 out.write(fileBits[i]);
             }
         }
     }
 
 }